Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs76056412 chr1:1157974 A/G 2.57E-10 487 31.27 30.73 13.73 KM Plot
PRAD rs7607147 chr2:107440303 T/C 0.000115 492 30.87 30.7 32.63 KM Plot
PRAD rs7607635 chr2:107446918 A/C 0.000113 494 30.8 31.27 32.63 KM Plot
PRAD rs7608410 chr2:107450390 C/T 0.000122 494 30.8 31.07 32.63 KM Plot
PRAD rs76102143 chr9:72835473 T/C 1.75E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs7611048 chr3:112507399 A/G 2.15E-7 494 17.77 33.1 30.8 KM Plot
PRAD rs7616382 chr3:151097666 T/A 3.14E-5 488 17.9 28.65 31.35 KM Plot
PRAD rs76163871 chr5:154110667 G/A 0 477 29.97 33.07 4.87 KM Plot
PRAD rs76170986 chr2:239195894 C/G 8.93E-6 487 31 30.35 11.57 KM Plot
PRAD rs76187039 chr6:43233990 G/T 6.95E-5 488 31.28 28.35 21.57 KM Plot
PRAD rs76207590 chr6:7203995 A/C 0.00013 492 32.4 27.67 26.95 KM Plot
PRAD rs76257117 chr11:129945178 A/G 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs76259539 chr5:154227873 G/A 4.44E-16 493 29.97 37.43 16.13 KM Plot
PRAD rs7627901 chr3:45919392 T/C 3.43E-5 480 32.9 27.77 8.77 KM Plot
PRAD rs76326669 chr1:220263461 T/G 4.25E-5 481 31.23 24.9 39.5 KM Plot